The only way to currently automate RightEdge is via the command line. Since you can provide switches within Visual Studio, this is fine.
See the Automating RightEdge topic
for the switches and their functions.
I've got a lot of experance with VS and am most comfortable working in that environment. I've created a trading system in VS 2010 (set to complie to NetFx 3.5). Now that I have the system started I would like to bootstrap it into RE to execute. I'm not really sure how to "teach" RE that the system exists (I know how to drop off plugins but not systems) and have RE run the system live. Any help would be appreciated.